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ccdc138.L coiled-coil domain containing 138 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734462, updated on 4-Nov-2024

Summary

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Official Symbol
ccdc138.L
Official Full Name
coiled-coil domain containing 138 L homeolog
Primary source
Xenbase:XB-GENE-5842326
Locus tag
XELAEV_18012917mg
See related
EnsemblRapid:ENSXLAG00005011204 AllianceGenome:Xenbase:XB-GENE-5842326
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ccdc138
Summary
Orthologous to human CCDC138 (coiled-coil domain containing 138). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ccdc138.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (113527681..113546665, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (107695953..107715030, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene SH3 domain containing ring finger 3 L homeolog Neighboring gene ectodysplasin A receptor L homeolog Neighboring gene RAN binding protein 2 L homeolog Neighboring gene LIM-type zinc finger domains 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115290

General protein information

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Preferred Names
coiled-coil domain containing 138 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095943.1 → NP_001089412.1  coiled-coil domain containing 138 L homeolog

    See identical proteins and their annotated locations for NP_001089412.1

    Status: PROVISIONAL

    Source sequence(s)
    BC094188
    UniProtKB/TrEMBL
    A0A974DR70, Q52KU2
    Related
    ENSXLAP00005032936.1, ENSXLAT00005033730.1
    Conserved Domains (1) summary
    pfam15290
    Location:110 → 238
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    113527681..113546665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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