klf10.S KLF transcription factor 10 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: klf10.S
Official Full Name: KLF transcription factor 10 S homeolog
Primary source: Xenbase:XB-GENE-866571
Locus tag: XELAEV_18033922mg
See related: EnsemblRapid:ENSXLAG00005005260 AllianceGenome:Xenbase:XB-GENE-866571
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: klf10
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Orthologous to human KLF10 (KLF transcription factor 10). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 6S

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6S	NC_054382.1 (117822055..117829835, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6S	NC_030735.1 (109172787..109180977, complement)

Chromosome 6S - NC_054382.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: KLF transcription factor 10 S homeolog

Names: Kruppel-like factor 10 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001095871.2 → NP_001089340.1 KLF transcription factor 10 S homeolog

See identical proteins and their annotated locations for NP_001089340.1

Status: PROVISIONAL

Source sequence(s)

BC092147

UniProtKB/TrEMBL

A0A974CKA8, Q56A67

Related

ENSXLAP00005015496.1, ENSXLAT00005015782.1

Conserved Domains (3) summary

sd00017
Location:346 → 365

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:401 → 423

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:387 → 410

zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

117822055..117829835 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)