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XB5884357.L uncharacterized XB5884357 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734387, updated on 4-Nov-2024

Summary

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Symbol
XB5884357.L
Full Name
uncharacterized XB5884357 L homeolog
Primary source
Xenbase:XB-GENE-6487587
Locus tag
XELAEV_18032522mg
See related
EnsemblRapid:ENSXLAG00005024907 AllianceGenome:Xenbase:XB-GENE-6487587
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
LOC100489386.L
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Genomic context

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See XB5884357.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (162784362..162790863)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (153660968..153667439)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene heat shock transcription factor 1 L homeolog Neighboring gene BOP1 ribosomal biogenesis factor L homeolog Neighboring gene scleraxis bHLH transcription factor L homeolog Neighboring gene Rho GTPase activating protein 39 L homeolog Neighboring gene claudin-23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC115333

General protein information

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Preferred Names
uncharacterized protein LOC734387

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095868.1 → NP_001089337.1  uncharacterized protein LOC734387

    See identical proteins and their annotated locations for NP_001089337.1

    Status: PREDICTED

    Source sequence(s)
    BC092119
    UniProtKB/TrEMBL
    A0A974CQY5, Q58E10
    Related
    ENSXLAP00005073810.1, ENSXLAT00005075375.1
    Conserved Domains (2) summary
    pfam15226
    Location:16 → 85
    HPIP; HCF-1 beta-propeller-interacting protein family
    pfam15810
    Location:103 → 160
    CCDC117; Coiled-coil domain-containing protein 117

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    162784362..162790863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials