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oscp1.L organic solute carrier partner 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734329, updated on 4-Nov-2024

Summary

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Official Symbol
oscp1.L
Official Full Name
organic solute carrier partner 1 L homeolog
Primary source
Xenbase:XB-GENE-992942
Locus tag
XELAEV_18012530mg
See related
EnsemblRapid:ENSXLAG00005003084 AllianceGenome:Xenbase:XB-GENE-992942
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nor1; oscp1
Summary
Predicted to be located in cytoplasm and plasma membrane. Orthologous to human OSCP1 (organic solute carrier partner 1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See oscp1.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (89597023..89616945, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (84053465..84073387, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene eva-1 homolog B L homeolog Neighboring gene serine/threonine kinase 40 L homeolog Neighboring gene mitochondrial ribosomal protein S15 L homeolog Neighboring gene oligodendrocyte transcription factor 4 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oxidored-nitro domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095812.1 → NP_001089281.1  oxidored-nitro domain-containing protein

    See identical proteins and their annotated locations for NP_001089281.1

    Status: PROVISIONAL

    Source sequence(s)
    BC090217
    UniProtKB/TrEMBL
    A0A974HY74, Q5EAW7
    Related
    ENSXLAP00005009243.1, ENSXLAT00005009382.1
    Conserved Domains (1) summary
    pfam10188
    Location:18 → 189
    Oscp1; Organic solute transport protein 1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    89597023..89616945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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