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scaf8.L SR-related CTD associated factor 8 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734306, updated on 18-Sep-2024

Summary

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Official Symbol
scaf8.L
Official Full Name
SR-related CTD associated factor 8 L homeolog
Primary source
Xenbase:XB-GENE-919931
Locus tag
XELAEV_18026831mg
See related
EnsemblRapid:ENSXLAG00005030636
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rbm16; scaf8
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See scaf8.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (54636713..54704918)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (53388378..53456821)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene afadin, adherens junction formation factor L homeolog Neighboring gene unc-93 homolog A gene 2 L homeolog Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 4 L homeolog Neighboring gene uncharacterized LOC121393670

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84961

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SR-related CTD associated factor 8 L homeolog
Names
RNA binding motif protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095790.1 → NP_001089259.1  SR-related CTD associated factor 8 L homeolog

    See identical proteins and their annotated locations for NP_001089259.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089292
    UniProtKB/TrEMBL
    A0A974HJD0, Q5FWL5
    Related
    ENSXLAP00005092029.1, ENSXLAT00005093712.1
    Conserved Domains (2) summary
    cd03562
    Location:4 → 125
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    cd12462
    Location:473 → 551
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    54636713..54704918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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