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myd88.S myeloid differentiation primary response 88 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734302, updated on 17-Aug-2024

Summary

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Official Symbol
myd88.S
Official Full Name
myeloid differentiation primary response 88 S homeolog
Primary source
Xenbase:XB-GENE-6251474
Locus tag
XELAEV_18032794mg
See related
EnsemblRapid:ENSXLAG00005032855
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
XMyD88; myd88d; myd88-a; myd88-b
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 6S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (7397765..7409555)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (6996663..7008304)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene phospholipase C delta 1 S homeolog Neighboring gene mitogen-activated protein kinase kinase kinase 22 S homeolog Neighboring gene oxidative stress responsive kinase 1 S homeolog Neighboring gene solute carrier family 22 member 13 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84928

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables TIR domain binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within MyD88-dependent toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within inflammatory response IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within innate immune response IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
myeloid differentiation primary response protein MyD88-B
Names
Toll/IL-1 receptor binding protein MyD88-B
myeloid differentiation primary response gene (88)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095786.1 → NP_001089255.1  myeloid differentiation primary response protein MyD88-B

    See identical proteins and their annotated locations for NP_001089255.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089284
    UniProtKB/Swiss-Prot
    Q5FWM2
    UniProtKB/TrEMBL
    A0A974CJJ7
    Related
    ENSXLAP00005098521.1, ENSXLAT00005100345.1
    Conserved Domains (2) summary
    smart00255
    Location:148 → 282
    TIR; Toll - interleukin 1 - resistance
    cd08312
    Location:24 → 101
    Death_MyD88; Death domain of Myeloid Differentation primary response protein MyD88

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    7397765..7409555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5FWM2.1 GenPept UniProtKB/Swiss-Prot:Q5FWM2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials