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bloc1s6.S biogenesis of lysosomal organelles complex-1, subunit 6, pallidin S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734279, updated on 4-Nov-2024

Summary

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Official Symbol
bloc1s6.S
Official Full Name
biogenesis of lysosomal organelles complex-1, subunit 6, pallidin S homeolog
Primary source
Xenbase:XB-GENE-6251660
Locus tag
XELAEV_18020607mg
See related
EnsemblRapid:ENSXLAG00005013089 AllianceGenome:Xenbase:XB-GENE-6251660
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pldn; bloc1s6
Summary
Predicted to act upstream of or within intracellular transport. Predicted to be located in transport vesicle. Predicted to be part of BLOC-1 complex. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome 9. Orthologous to human BLOC1S6 (biogenesis of lysosomal organelles complex 1 subunit 6). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See bloc1s6.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (49702771..49711448, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (48432443..48441120, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene nicotinamide riboside kinase 2 S homeolog Neighboring gene sulfide quinone oxidoreductase S homeolog Neighboring gene solute carrier family 30 (zinc transporter), member 4 S homeolog Neighboring gene ATPase, class I, type 8B, member 4 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84864

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within intracellular transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of BLOC-1 complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in transport vesicle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
biogenesis of lysosomal organelles complex-1, subunit 6, pallidin S homeolog
Names
pallidin homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095763.1 → NP_001089232.1  biogenesis of lysosomal organelles complex-1, subunit 6, pallidin S homeolog

    See identical proteins and their annotated locations for NP_001089232.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089244
    UniProtKB/TrEMBL
    A0A974DA00, Q5FWQ8
    Related
    ENSXLAP00005038528.1, ENSXLAT00005039447.1
    Conserved Domains (1) summary
    pfam14712
    Location:49 → 138
    Snapin_Pallidin; Snapin/Pallidin

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    49702771..49711448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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