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clint1.L clathrin interactor 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734277, updated on 4-Nov-2024

Summary

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Official Symbol
clint1.L
Official Full Name
clathrin interactor 1 L homeolog
Primary source
Xenbase:XB-GENE-1013624
Locus tag
XELAEV_1801678010mg
See related
EnsemblRapid:ENSXLAG00005023201 AllianceGenome:Xenbase:XB-GENE-1013624
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
enth; epn4; epnr; clint; clint1; epsinr; clint1a; clint1-a; clint1-b
Summary
Predicted to enable clathrin binding activity and phospholipid binding activity. Predicted to act upstream of or within endocytosis. Predicted to be located in endosome and plasma membrane. Predicted to be part of clathrin vesicle coat. Orthologous to human CLINT1 (clathrin interactor 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See clint1.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (17746519..17826503, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (5915637..5983556, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene cytoplasmic FMR1-interacting protein 2-like Neighboring gene uncharacterized LOC121401410 Neighboring gene NIPA-like domain containing 4 L homeolog Neighboring gene uncharacterized LOC108710186 Neighboring gene transcription factor COE1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The U-box ligase carboxyl-terminus of Hsc 70-interacting protein ubiquitylates Epsin. Timsit YE, et al. Biochem Biophys Res Commun, 2005 Mar 11. PMID 15694383
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
  
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endocytosis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of clathrin vesicle coat IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
clathrin interactor 1 L homeolog
Names
clathrin interactor 1 a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095761.1 → NP_001089230.1  clathrin interactor 1 L homeolog

    See identical proteins and their annotated locations for NP_001089230.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089194
    UniProtKB/TrEMBL
    Q5FWV2
    Related
    ENSXLAP00005068571.1, ENSXLAT00005070105.1
    Conserved Domains (1) summary
    cd03571
    Location:23 → 146
    ENTH_epsin; ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    17746519..17826503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018251202.2 → XP_018106691.1  clathrin interactor 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0UG52
    Conserved Domains (1) summary
    cd16989
    Location:6 → 131
    ENTH_EpsinR; Epsin N-Terminal Homology (ENTH) domain of Epsin-related protein

  2. XM_041585234.1 → XP_041441168.1  clathrin interactor 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0UG52
    Related
    ENSXLAP00005068537.1, ENSXLAT00005070071.1
    Conserved Domains (1) summary
    cd16989
    Location:6 → 131
    ENTH_EpsinR; Epsin N-Terminal Homology (ENTH) domain of Epsin-related protein
Nucleotide Protein Strain
Heading Accession and Version

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