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txnl1.L thioredoxin like 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734269, updated on 4-Nov-2024

Summary

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Official Symbol
txnl1.L
Official Full Name
thioredoxin like 1 L homeolog
Primary source
Xenbase:XB-GENE-17336559
Locus tag
XELAEV_18008420mg
See related
EnsemblRapid:ENSXLAG00005032060 AllianceGenome:Xenbase:XB-GENE-17336559
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable protein-disulfide reductase activity. Predicted to be located in cytosol. Orthologous to human TXNL1 (thioredoxin like 1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See txnl1.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (220241335..220261828)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (207075083..207095543)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 L homeolog Neighboring gene WD repeat domain 7 L homeolog Neighboring gene transcription factor 4 L homeolog Neighboring gene coiled-coil domain containing 68 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC85151

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables protein-disulfide reductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC734269

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095753.1 → NP_001089222.1  uncharacterized protein LOC734269

    See identical proteins and their annotated locations for NP_001089222.1

    Status: PREDICTED

    Source sequence(s)
    BC089153
    UniProtKB/TrEMBL
    A0A974E3L5, Q5HZ70
    Related
    ENSXLAP00005096107.1, ENSXLAT00005097873.1
    Conserved Domains (2) summary
    cd02947
    Location:12 → 104
    TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
    pfam06201
    Location:126 → 268
    PITH; PITH domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    220241335..220261828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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