pcif1.S phosphorylated CTD interacting factor 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: pcif1.S
Official Full Name: phosphorylated CTD interacting factor 1 S homeolog
Primary source: Xenbase:XB-GENE-971102
Locus tag: XELAEV_18046540mg
See related: EnsemblRapid:ENSXLAG00005035015 AllianceGenome:Xenbase:XB-GENE-971102
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: pcif1; ppp1r121
Summary: Predicted to enable RNA polymerase II C-terminal domain binding activity and mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity. Predicted to be located in nucleus. Orthologous to human PCIF1 (phosphorylated CTD interacting factor 1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 9_10S

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (32060737..32079945)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (26587342..26606552)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA polymerase II C-terminal domain binding	IEA Inferred from Electronic Annotation more info
enables mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: phosphorylated CTD interacting factor 1 S homeolog

Names: PDX1 C-terminal inhibiting factor 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001095735.1 → NP_001089204.1 phosphorylated CTD interacting factor 1 S homeolog

See identical proteins and their annotated locations for NP_001089204.1

Status: PROVISIONAL

Source sequence(s)

BC089119

UniProtKB/TrEMBL

A0A974H0N2, Q5HZA0

Related

ENSXLAP00005104722.1, ENSXLAT00005106756.1

Conserved Domains (2) summary

cd00201
Location:42 → 72

WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...

pfam12237
Location:448 → 610

PCIF1_WW; Phosphorylated CTD interacting factor 1 WW domain