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XB5813854.L provisional ortholog of ankyrin repeat domain 52 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734212, updated on 17-Aug-2024

Summary

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Symbol
XB5813854.L
Full Name
provisional ortholog of ankyrin repeat domain 52 L homeolog
Primary source
Xenbase:XB-GENE-5813859
Locus tag
XELAEV_18032415mg
See related
EnsemblRapid:ENSXLAG00005028368
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nompc; trpn1; LOC100492885.L
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Genomic context

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See XB5813854.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
29
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (158500908..158546547, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (149354738..149400536, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 45 member 4 L homeolog Neighboring gene G protein-coupled receptor 20 L homeolog Neighboring gene protein tyrosine phosphatase type IVA, member 3 L homeolog Neighboring gene cytochrome c oxidase copper chaperone COX11 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transient receptor potential N (TRPN1) from Xenopus interacts with the penta-EF-hand protein peflin. Wiemuth D, et al. FEBS Lett, 2012 Dec 14. PMID 23159937
  2. Xenopus TRPN1 (NOMPC) localizes to microtubule-based cilia in epithelial cells, including inner-ear hair cells. Shin JB, et al. Proc Natl Acad Sci U S A, 2005 Aug 30. PMID 16116094, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. TRPN1 is prominently located in lateral-line hair cells, auditory hair cells, and ciliated epidermal cells of developing embryos.
    Title: Xenopus TRPN1 (NOMPC) localizes to microtubule-based cilia in epithelial cells, including inner-ear hair cells.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
provisional ortholog of ankyrin repeat domain 52 L homeolog
Names
putative transient receptor potential channel
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like L homeolog
transient receptor potential channel-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095705.1 → NP_001089174.1  provisional ortholog of ankyrin repeat domain 52 L homeolog

    See identical proteins and their annotated locations for NP_001089174.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ576027
    UniProtKB/TrEMBL
    A0A974CQQ6, Q4A520
    Related
    ENSXLAP00005084415.1, ENSXLAT00005086064.1
    Conserved Domains (7) summary
    COG0666
    Location:607 → 829
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:852 → 977
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00023
    Location:313 → 341
    Ank; Ankyrin repeat
    pfam00520
    Location:1215 → 1406
    Ion_trans; Ion transport protein
    pfam01757
    Location:1102 → 1280
    Acyl_transf_3; Acyltransferase family
    pfam12796
    Location:895 → 982
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:857 → 888
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    158500908..158546547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018266681.2 → XP_018122170.1  provisional ortholog of ankyrin repeat domain 52 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0VHW8, A0A974CQQ6
    Related
    ENSXLAP00005084567.1, ENSXLAT00005086216.1

  2. XM_041565564.1 → XP_041421498.1  provisional ortholog of ankyrin repeat domain 52 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1KXN6, A0A974CQQ6
    Conserved Domains (5) summary
    PHA02876
    Location:60 → 420
    PHA02876; ankyrin repeat protein; Provisional
    PHA03095
    Location:598 → 904
    PHA03095; ankyrin-like protein; Provisional
    TIGR00870
    Location:906 → 1555
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:937 → 968
    ANK; ANK repeat [structural motif]
    cl39094
    Location:438 → 741
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_041565565.1 → XP_041421499.1  provisional ortholog of ankyrin repeat domain 52 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1KZ17
    Conserved Domains (4) summary
    PHA03095
    Location:360 → 666
    PHA03095; ankyrin-like protein; Provisional
    TIGR00870
    Location:668 → 1317
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:699 → 730
    ANK; ANK repeat [structural motif]
    cl39094
    Location:200 → 503
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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