U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ier5 immediate early response 5 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733986, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
ier5provided by Xenbase
Official Full Name
immediate early response 5provided by Xenbase
Primary source
Xenbase:XB-GENE-1004819
See related
Ensembl:ENSXETG00000045535 AllianceGenome:Xenbase:XB-GENE-1004819
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
sbbi48
Summary
Orthologous to human IER5 (immediate early response 5). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ier5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (100835495..100837989, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (90603177..90605671, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105947005 Neighboring gene zinc finger protein 91 Neighboring gene calcium channel, voltage-dependent, R type, alpha 1E subunit Neighboring gene uncharacterized LOC105947007 Neighboring gene KIAA1614 Neighboring gene syntaxin 6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
immediate early response gene 5 protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045694.1 → NP_001039159.1  immediate early response gene 5 protein

    See identical proteins and their annotated locations for NP_001039159.1

    Status: PROVISIONAL

    Source sequence(s)
    CR942620
    UniProtKB/TrEMBL
    A8WGU3, Q28BV1
    Related
    ENSXETP00000119305.1, ENSXETT00000110707.1
    Conserved Domains (1) summary
    pfam05760
    Location:24 → 291
    IER; Immediate early response protein (IER)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    100835495..100837989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials