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clpx caseinolytic mitochondrial matrix peptidase chaperone subunit X [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733875, updated on 17-Aug-2024

Summary

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Official Symbol
clpxprovided by Xenbase
Official Full Name
caseinolytic mitochondrial matrix peptidase chaperone subunit Xprovided by Xenbase
Primary source
Xenbase:XB-GENE-991453
See related
Ensembl:ENSXETG00000006656
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
EPP2
Orthologs
human mouse all
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Genomic context

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See clpx in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (116220785..116250644)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (117870841..117901108, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and death domain containing 1A Neighboring gene SPG21, maspardin Neighboring gene programmed cell death 7 Neighboring gene ubiquitin associated protein 1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein folding IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial
Names
ClpX caseinolytic peptidase X homolog
ClpX caseinolytic protease X homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045613.1 → NP_001039078.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial

    See identical proteins and their annotated locations for NP_001039078.1

    Status: PROVISIONAL

    Source sequence(s)
    CR855679
    UniProtKB/TrEMBL
    Q28D65
    Conserved Domains (3) summary
    smart01086
    Location:253 → 324
    ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
    PRK05342
    Location:20 → 352
    clpX; ATP-dependent protease ATP-binding subunit ClpX; Provisional
    pfam07724
    Location:30 → 246
    AAA_2; AAA domain (Cdc48 subfamily)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    116220785..116250644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012959181.3 → XP_012814635.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A6I8Q4D3, A0A6I8R4J6
    Related
    ENSXETP00000079693.1, ENSXETT00000067174.2
    Conserved Domains (2) summary
    PRK05342
    Location:163 → 585
    clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
    cl02609
    Location:95 → 123
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit

  2. XM_012959180.3 → XP_012814634.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q4D3, F6U0G1
    Related
    ENSXETP00000014583.3, ENSXETT00000014583.5
    Conserved Domains (2) summary
    PRK05342
    Location:163 → 599
    clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
    cl02609
    Location:95 → 123
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
Nucleotide Protein Strain
Heading Accession and Version

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