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ttc14 tetratricopeptide repeat domain 14 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733801, updated on 4-Nov-2024

Summary

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Official Symbol
ttc14provided by Xenbase
Official Full Name
tetratricopeptide repeat domain 14provided by Xenbase
Primary source
Xenbase:XB-GENE-989065
See related
Ensembl:ENSXETG00000019435 AllianceGenome:Xenbase:XB-GENE-989065
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable nucleic acid binding activity. Orthologous to human TTC14 (tetratricopeptide repeat domain 14). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ttc14 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (108435386..108448693, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (95460472..95473760)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene FMR1 autosomal homolog 1 Neighboring gene coiled-coil domain 39 molecular ruler complex subunit Neighboring gene peroxisomal biogenesis factor 5-like Neighboring gene ubiquitin specific peptidase 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tetratricopeptide repeat domain 14; tetratricopeptide repeat protein 14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    108435386..108448693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012963389.3 → XP_012818843.1  tetratricopeptide repeat protein 14

    UniProtKB/TrEMBL
    A0A7D9NJW8, A0A803JMV1
    Related
    ENSXETP00000109295.1, ENSXETT00000119810.1
    Conserved Domains (4) summary
    smart00316
    Location:115 → 198
    S1; Ribosomal protein S1-like RNA-binding domain
    COG0457
    Location:284 → 415
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:330 → 360
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:307 → 345
    TPR_11; TPR repeat

RNA

  1. XR_001170792.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials