U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

XB5922676 provisional ortholog of caveolin 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733765, updated on 17-Aug-2024

Summary

Symbol
XB5922676provided by Xenbase
Full Name
provisional ortholog of caveolin 3provided by Xenbase
Primary source
Xenbase:XB-GENE-5922677
See related
Ensembl:ENSXETG00000025206
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See XB5922676 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (127888600..127890422, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (117445955..117447744, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene chromosome 4 C3orf18 homolog Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 2 Neighboring gene transmembrane protein 115 Neighboring gene cytochrome b561 family member D2

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within caveola assembly IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
located_in caveola IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
provisional ortholog of caveolin 3
Names
caveolin 3

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044514.2NP_001037979.1  provisional ortholog of caveolin 3

    See identical proteins and their annotated locations for NP_001037979.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135171
    UniProtKB/TrEMBL
    F7BI31, Q28FL2
    Related
    ENSXETP00000053955.2, ENSXETT00000053955.4
    Conserved Domains (1) summary
    pfam01146
    Location:14137
    Caveolin

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    127888600..127890422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)