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IDH3B isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta [ Sus scrofa (pig) ]

Gene ID: 733641, updated on 17-Aug-2024

Summary

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Official Symbol
IDH3Bprovided by VGNC
Official Full Name
isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit betaprovided by VGNC
Primary source
VGNC:VGNC:108724
See related
Ensembl:ENSSSCG00000007173
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in heart (RPKM 132.4), psoas major muscle (RPKM 111.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See IDH3B in Genome Data Viewer
Location:
chromosome: 17
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (32955061..32960110)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (37446330..37451309, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene carboxypeptidase X, M14 family member 1 Neighboring gene EBF family member 4 Neighboring gene uncharacterized LOC102158952 Neighboring gene NOP56 ribonucleoprotein Neighboring gene transmembrane channel like 2 Neighboring gene RNA-binding protein 25-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. A 304 bp insertion/deletion mutation in promoter region induces the increase of porcine IDH3β gene expression. Ren Z, et al. Mol Biol Rep, 2012 Feb. PMID 21617947
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isocitrate dehydrogenase [NAD] subunit beta, mitochondrial
Names
Isocitric dehydrogenase subunit beta
NAD(+)-specific ICDH subunit beta
isocitrate dehydrogenase (NAD(+)) 3 beta
isocitrate dehydrogenase 3 (NAD(+)) beta
NP_001038040.1
XP_020932991.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044575.2 → NP_001038040.1  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial

    See identical proteins and their annotated locations for NP_001038040.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ507860
    UniProtKB/TrEMBL
    A0A480P340, A0A4X1SI72, A0A8D1ZWC4, F1S897, Q1G1K7, Q1G1L0
    Related
    ENSSSCP00000007635.3, ENSSSCT00000007846.5
    Conserved Domains (1) summary
    cl00445
    Location:47 → 380
    Iso_dh; Isocitrate/isopropylmalate dehydrogenase

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    32955061..32960110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021077332.1 → XP_020932991.1  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1

    UniProtKB/TrEMBL
    Q1G1K9, Q1G1L1
    Related
    ENSSSCP00000038577.2, ENSSSCT00000037919.2
    Conserved Domains (1) summary
    cl00445
    Location:47 → 377
    Iso_dh; Isocitrate/isopropylmalate dehydrogenase

RNA

  1. XR_002339840.1 RNA Sequence

    Related
    ENSSSCT00000070773.1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P56472.1 GenPept UniProtKB/Swiss-Prot:P56472

Gene LinkOut

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