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PLAGL1 PLAG1 like zinc finger 1 [ Sus scrofa (pig) ]

Gene ID: 733596, updated on 17-Aug-2024

Summary

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Official Symbol
PLAGL1provided by VGNC
Official Full Name
PLAG1 like zinc finger 1provided by VGNC
Primary source
VGNC:VGNC:91510
See related
Ensembl:ENSSSCG00000004127
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 2.5), kidney (RPKM 2.2) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PLAGL1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (21299830..21371070)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (23640710..23708147)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110259972 Neighboring gene syntaxin 11 Neighboring gene splicing factor 3b subunit 5 Neighboring gene zinc finger C2HC-type containing 1B Neighboring gene LTV1 ribosome biogenesis factor Neighboring gene phosphatase and actin regulator 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Imprinted status of pleomorphic adenoma gene-like I and paternal expression gene 10 genes in pigs. Zhang FW, et al. J Anim Sci, 2007 Apr. PMID 17178803
  2. Characterization of conserved and nonconserved imprinted genes in swine. Bischoff SR, et al. Biol Reprod, 2009 Nov. PMID 19571260, Free PMC Article
  3. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  4. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein PLAGL1
Names
pleiomorphic adenoma gene-like 1
pleiomorphic adenoma-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044545.1 → NP_001038010.1  zinc finger protein PLAGL1

    See identical proteins and their annotated locations for NP_001038010.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ288899
    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Related
    ENSSSCP00000035313.1, ENSSSCT00000058859.3
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    21299830..21371070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021084039.1 → XP_020939698.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  2. XM_021084163.1 → XP_020939822.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  3. XM_021084053.1 → XP_020939712.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  4. XM_021084045.1 → XP_020939704.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  5. XM_021084184.1 → XP_020939843.1  zinc finger protein PLAGL1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VMZ9
    Conserved Domains (4) summary
    COG5236
    Location:28 → 155
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:70 → 90
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:10 → 32
    zf-C2H2; Zinc finger, C2H2 type
    pfam15800
    Location:150 → 276
    CiPC; Clock interacting protein circadian

  6. XM_021084064.1 → XP_020939723.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  7. XM_021084080.1 → XP_020939739.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  8. XM_021084087.1 → XP_020939746.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  9. XM_021084092.1 → XP_020939751.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  10. XM_013984762.2 → XP_013840216.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  11. XM_005654368.3 → XP_005654425.1  zinc finger protein PLAGL1 isoform X1

    See identical proteins and their annotated locations for XP_005654425.1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  12. XM_013984759.2 → XP_013840213.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  13. XM_013984767.2 → XP_013840221.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  14. XM_021084067.1 → XP_020939726.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  15. XM_021084059.1 → XP_020939718.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  16. XM_021084192.1 → XP_020939851.1  zinc finger protein PLAGL1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VMZ9
    Conserved Domains (4) summary
    COG5236
    Location:28 → 155
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:70 → 90
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:10 → 32
    zf-C2H2; Zinc finger, C2H2 type
    pfam15800
    Location:150 → 276
    CiPC; Clock interacting protein circadian

  17. XM_021084121.1 → XP_020939780.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  18. XM_005654371.3 → XP_005654428.1  zinc finger protein PLAGL1 isoform X1

    See identical proteins and their annotated locations for XP_005654428.1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  19. XM_013984764.2 → XP_013840218.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  20. XM_021084171.1 → XP_020939830.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  21. XM_021084199.1 → XP_020939858.1  zinc finger protein PLAGL1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VMZ9
    Conserved Domains (4) summary
    COG5236
    Location:28 → 155
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:70 → 90
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:10 → 32
    zf-C2H2; Zinc finger, C2H2 type
    pfam15800
    Location:150 → 276
    CiPC; Clock interacting protein circadian

  22. XM_021084176.1 → XP_020939835.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  23. XM_021084114.1 → XP_020939773.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  24. XM_021084099.1 → XP_020939758.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  25. XM_021084128.1 → XP_020939787.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  26. XM_021084106.1 → XP_020939765.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  27. XM_021084156.1 → XP_020939815.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian

  28. XM_021084182.1 → XP_020939841.1  zinc finger protein PLAGL1 isoform X1

    UniProtKB/Swiss-Prot
    Q2I689
    UniProtKB/TrEMBL
    A0A4X1VMZ9, C0LN01
    Conserved Domains (3) summary
    COG5189
    Location:29 → 109
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:6 → 26
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15800
    Location:202 → 328
    CiPC; Clock interacting protein circadian
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2I689.1 GenPept UniProtKB/Swiss-Prot:Q2I689

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