U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

supt5h.S SPT5 homolog, DSIF elongation factor subunit S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 733281, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
supt5h.S
Official Full Name
SPT5 homolog, DSIF elongation factor subunit S homeolog
Primary source
Xenbase:XB-GENE-1013286
Locus tag
XELAEV_18042594mg
See related
EnsemblRapid:ENSXLAG00005005857
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
spt5; spt5h; supt5h; tat-ct1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See supt5h.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
31
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (87200657..87240430)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (84828926..84869658)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene provisional ortholog of ZFP36 ring finger protein like 1 S homeolog Neighboring gene pleckstrin homology and RhoGEF domain containing G2 S homeolog Neighboring gene type III intron-containing interferon 1 S homeolog Neighboring gene translocase of inner mitochondrial membrane 50 homolog S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within translational elongation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of DSIF complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SPT5 homolog, DSIF elongation factor subunit S homeolog
Names
suppressor of Ty 5 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095623.1 → NP_001089092.1  SPT5 homolog, DSIF elongation factor subunit S homeolog

    See identical proteins and their annotated locations for NP_001089092.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129066
    UniProtKB/TrEMBL
    A0A974C4E2, A1L1H7
    Related
    ENSXLAP00005017437.1, ENSXLAT00005017733.1
    Conserved Domains (6) summary
    cd09888
    Location:179 → 266
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:335 → 828
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:277 → 314
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:1025 → 1081
    KOW_Spt5_6; KOW domain of Spt5, repeat 6
    pfam03154
    Location:840 → 967
    Atrophin-1; Atrophin-1 family
    pfam11942
    Location:95 → 173
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    87200657..87240430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041574314.1 → XP_041430248.1  SPT5 homolog, DSIF elongation factor subunit S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974C4E2, A1L1H7
    Related
    ENSXLAP00005017501.1, ENSXLAT00005017797.1
    Conserved Domains (6) summary
    cd09888
    Location:179 → 266
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:335 → 828
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:277 → 314
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:1025 → 1081
    KOW_Spt5_6; KOW domain of Spt5, repeat 6
    pfam03154
    Location:840 → 967
    Atrophin-1; Atrophin-1 family
    pfam11942
    Location:95 → 173
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.