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LOC732772 Zea m 13 allergen [ Zea mays ]

Gene ID: 732772, updated on 14-Dec-2023

Summary

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Gene symbol
LOC732772
Gene description
Zea m 13 allergen
Locus tag
ZEAMMB73_Zm00001d036816
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
PG2C; GRMZM2G160526
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Genomic context

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See LOC732772 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 6 NC_050101.1 (108905430..108906970)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 6 NC_024464.2 (101867709..101869249)

Chromosome 6 - NC_050101.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109940185 Neighboring gene exopolygalacturonase-like Neighboring gene polygalacturonase Neighboring gene exopolygalacturonase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteome analysis of maize pollen for allergy-relevant components. Petersen A, et al. Proteomics, 2006 Dec. PMID 17080481
  2. Characterization of a multigene family encoding an exopolygalacturonase in maize. Barakate A, et al. J Mol Biol, 1993 Feb 5. PMID 8433375
  3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exopolygalacturonase
Names
exoPG
exopolygalacturonase7
galacturan 1,4-alpha-galacturonidase
pectinase
NP_001105862.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001112392.2 → NP_001105862.1  exopolygalacturonase precursor

    See identical proteins and their annotated locations for NP_001105862.1

    Status: VALIDATED

    Source sequence(s)
    BQ577874, CABHLF010000009, DV549952, EC870252, FL211182
    UniProtKB/Swiss-Prot
    P35339
    UniProtKB/TrEMBL
    A0A3L6ECZ9, A0A8J8Y7H8, Q1ZYQ7
    Conserved Domains (1) summary
    cl19188
    Location:7 → 397
    PL-6; Polysaccharide Lyase Family 6

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050101.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    108905430..108906970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P35339.1 GenPept UniProtKB/Swiss-Prot:P35339

Gene LinkOut

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