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3110056K07Rik RIKEN cDNA 3110056K07 gene [ Mus musculus (house mouse) ]

Gene ID: 73204, updated on 22-Oct-2024

Summary

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Official Symbol
3110056K07Rikprovided by MGI
Official Full Name
RIKEN cDNA 3110056K07 geneprovided by MGI
Primary source
MGI:MGI:1920454
See related
Ensembl:ENSMUSG00000085622 AllianceGenome:MGI:1920454
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4921536K06Rik
Expression
Ubiquitous expression in bladder adult (RPKM 6.6), CNS E11.5 (RPKM 4.7) and 25 other tissues See more
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Genomic context

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See 3110056K07Rik in Genome Data Viewer
Location:
12 C2; 12 29.39 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (71038389..71062597, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (70991615..71015823, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8488 Neighboring gene ARP10 actin-related protein 10 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:72069569-72069678 Neighboring gene STARR-positive B cell enhancer ABC_E1441 Neighboring gene STARR-positive B cell enhancer ABC_E7144 Neighboring gene STARR-positive B cell enhancer ABC_E1442 Neighboring gene nuclear encoded tRNA lysine 17 (anticodon CTT) Neighboring gene proteasome subunit alpha 3 Neighboring gene STARR-positive B cell enhancer ABC_E11778 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:72116322-72116431 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:72116588-72116697 Neighboring gene AT-rich interaction domain 4A Neighboring gene STARR-seq mESC enhancer starr_32414 Neighboring gene STARR-positive B cell enhancer ABC_E7145 Neighboring gene STARR-seq mESC enhancer starr_32415 Neighboring gene translocase of outer mitochondrial membrane 20-like Neighboring gene predicted gene, 32906 Neighboring gene translocase of inner mitochondrial membrane 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  3. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045055.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) consists of four exons.
    Source sequence(s)
    AK015004, AV470322
    Related
    ENSMUST00000127129.9

  2. NR_045056.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks the 3' exon but has an alternate 3' sequence, compared to variant 1.
    Source sequence(s)
    AK077771, AV470322, BF019812

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    71038389..71062597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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