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LOC729815 uncharacterized LOC729815 [ Homo sapiens (human) ]

Gene ID: 729815, updated on 16-Jan-2024

Summary

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Gene symbol
LOC729815
Gene description
uncharacterized LOC729815
See related
Ensembl:ENSG00000293221
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 4.7) See more
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Genomic context

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See LOC729815 in Genome Data Viewer
Location:
10q22.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (79506370..79510982, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (80375500..80380112, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (81266126..81270738, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378383 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3647 Neighboring gene CRISPRi-FlowFISH-validated PPIF regulatory element GRCh37_chr10:81250836-81251336 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:81257847-81258047 Neighboring gene tetrapeptide repeat homeobox 1 pseudogene 1 Neighboring gene eukaryotic translation initiation factor 5A like 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:81283336-81283836 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:81288830-81289000 Neighboring gene ribosomal protein S12 pseudogene 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • DKFZp434E2028

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136624.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK302451, AL133481

  2. NR_136625.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133481
    Related
    ENST00000648988.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    79506370..79510982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    80375500..80380112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases