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LOC729732 uncharacterized LOC729732 [ Homo sapiens (human) ]

Gene ID: 729732, updated on 10-Oct-2023

Summary

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Gene symbol
LOC729732
Gene description
uncharacterized LOC729732
See related
Ensembl:ENSG00000283674
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 1.5), lung (RPKM 0.6) and 12 other tissues See more
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Genomic context

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See LOC729732 in Genome Data Viewer
Location:
8p23.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (12537079..12665611, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (12803778..12931744, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (12394588..12523120, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene FAM86B2 divergent transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12302867-12303469 Neighboring gene defensin beta 109E (pseudogene) Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12338855-12339594 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12344744-12345435 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12354567-12355426 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12355427-12356286 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12358763-12359264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12368735-12369234 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12380441-12380940 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:12382083-12382620 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:12383331-12384025 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12388844-12389380 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:12394565-12395190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12396623-12397488 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12401177-12401677 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12400676-12401176 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12404893-12405684 Neighboring gene RPS3A pseudogene 34 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12445595-12446325 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12446326-12447056 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12447057-12447786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12448852-12449438 Neighboring gene Sharpr-MPRA regulatory region 3896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12468951-12469450 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12471525-12472026 Neighboring gene RPS3A pseudogene 35 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12516146-12516798 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18949 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27041 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12523581-12524082 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12533771-12534288 Neighboring gene VPS51 pseudogene 19 Neighboring gene olfactory receptor family 7 subfamily E member 8 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. Uren PJ, et al. RNA Biol, 2016. PMID 26760575, Free PMC Article
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Clone Names

  • FLJ42906

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047662.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068587, AK124896, CN276994, DA292681, DB329641
    Related
    ENST00000635775.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    12537079..12665611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    5732453..5861307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    12803778..12931744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases