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RPSAP26 ribosomal protein SA pseudogene 26 [ Homo sapiens (human) ]

Gene ID: 729209, updated on 17-Sep-2024

Summary

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Official Symbol
RPSAP26provided by HGNC
Official Full Name
ribosomal protein SA pseudogene 26provided by HGNC
Primary source
HGNC:HGNC:36195
See related
AllianceGenome:HGNC:36195
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPSA_3_227
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Genomic context

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See RPSAP26 in Genome Data Viewer
Location:
2p15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (62146301..62147326)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (62152528..62153553)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (62373436..62374461)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907773 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:62114819-62115380 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:62115381-62115940 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:62116501-62117060 Neighboring gene chaperonin containing TCP1 subunit 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15843 Neighboring gene copper metabolism domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:62144288-62144788 Neighboring gene uncharacterized LOC124906012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15844 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15845 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15846 Neighboring gene MPRA-validated peak3724 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15848 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15849 Neighboring gene uncharacterized LOC124906013 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:62421735-62422342 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11533 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:62422949-62423555 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class P pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010627.2 

    Range
    101..1126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    62146301..62147326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    62152528..62153553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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