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TEX46 testis expressed 46 [ Homo sapiens (human) ]

Gene ID: 729059, updated on 5-Mar-2024

Summary

Official Symbol
TEX46provided by HGNC
Official Full Name
testis expressed 46provided by HGNC
Primary source
HGNC:HGNC:44651
See related
Ensembl:ENSG00000227868 AllianceGenome:HGNC:44651
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TEX#; C1orf234
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 14.1) See more
Orthologs
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Genomic context

See TEX46 in Genome Data Viewer
Location:
1p36.12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (23010834..23015852, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (22836535..22841556, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (23337327..23342345, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene EPH receptor B2 Neighboring gene uncharacterized LOC124903874 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:23216005-23216210 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:23251233-23251733 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:23256871-23257055 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:23287810-23287985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:23290925-23291425 Neighboring gene lactamase beta like 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:23336854-23338053 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:23345765-23346452 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:23346453-23347138 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 356 Neighboring gene lysine demethylase 1A Neighboring gene microRNA 3115 Neighboring gene leucine zipper protein 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:23459884-23460190 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:23466860-23467360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:23467361-23467861 Neighboring gene RNA, U6 small nuclear 514, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General protein information

Preferred Names
testis-expressed protein 46
Names
uncharacterized protein C1orf234

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001242521.2NP_001229450.1  testis-expressed protein 46 precursor

    See identical proteins and their annotated locations for NP_001229450.1

    Status: VALIDATED

    Source sequence(s)
    AI652913, AL031428, BX351337, BX377446
    Consensus CDS
    CCDS57978.1
    UniProtKB/Swiss-Prot
    H3BR39, H3BTG2
    UniProtKB/TrEMBL
    A0A0D9SG37
    Related
    ENSP00000457161.1, ENST00000566855.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    23010834..23015852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    22836535..22841556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)