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FAM90A17 family with sequence similarity 90 member A17 [ Homo sapiens (human) ]

Gene ID: 728746, updated on 8-Nov-2023

Summary

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Official Symbol
FAM90A17provided by HGNC
Official Full Name
family with sequence similarity 90 member A17provided by HGNC
Primary source
HGNC:HGNC:32265
See related
Ensembl:ENSG00000285720 AllianceGenome:HGNC:32265
Gene type
protein coding
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM90A16P; FAM90A17P
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Genomic context

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Location:
8p23.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (7746034..7749044)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (11891986..11894996)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (7603556..7606566)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene family with sequence similarity 90 member A16 Neighboring gene family with sequence similarity 90 member A8 Neighboring gene family with sequence similarity 90 member A19 Neighboring gene family with sequence similarity 90 member A9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the multi-copy gene family FAM90A as a copy number variant in different ethnic backgrounds. Bosch N, et al. Gene, 2008 Sep 1. PMID 18602769
  2. Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. Bosch N, et al. Hum Mol Genet, 2007 Nov 1. PMID 17684299
  3. DNA sequence and analysis of human chromosome 8. Nusbaum C, et al. Nature, 2006 Jan 19. PMID 16421571

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General protein information

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Preferred Names
protein FAM90A17
Names
Protein FAM90A17
family with sequence similarity 90 member A17, pseudogene
putative protein FAM90A16P/FAM90A17P

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397391.1 → NP_001384320.1  protein FAM90A17

    Status: INFERRED

    Source sequence(s)
    AC084121
    Consensus CDS
    CCDS94254.1
    UniProtKB/Swiss-Prot
    A6NEW6, P0DV73, P0DV74, Q658T7
    Related
    ENSP00000497508.1, ENST00000650426.1
    Conserved Domains (2) summary
    PHA03247
    Location:25 → 371
    PHA03247; large tegument protein UL36; Provisional
    pfam15288
    Location:41 → 76
    zf-CCHC_6; Zinc knuckle

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    7746034..7749044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    5327967..5330977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    11891986..11894996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_011770.1: Suppressed sequence

    Description
    NG_011770.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DV74.1 GenPept UniProtKB/Swiss-Prot:P0DV74

Gene LinkOut

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