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CICP13 capicua transcriptional repressor pseudogene 13 [ Homo sapiens (human) ]

Gene ID: 728615, updated on 17-Sep-2024

Summary

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Official Symbol
CICP13provided by HGNC
Official Full Name
capicua transcriptional repressor pseudogene 13provided by HGNC
Primary source
HGNC:HGNC:37907
See related
AllianceGenome:HGNC:37907
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See CICP13 in Genome Data Viewer
Location:
1q41
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (222468098..222469897)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (221702049..221703848)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (222641440..222643239)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:222437375-222438574 Neighboring gene NANOG hESC enhancer GRCh37_chr1:222439721-222440263 Neighboring gene MPRA-validated peak714 silencer Neighboring gene QRSL1 pseudogene 2 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_5116 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:222483844-222485043 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_5126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2575 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:222643393-222643894 Neighboring gene tRNA-Thr (anticodon TGT) 2-1 Neighboring gene uncharacterized LOC728417 Neighboring gene uncharacterized LOC105372956

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • capicua homolog pseudogene 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022827.2 

    Range
    101..1900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    222468098..222469897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    221702049..221703848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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