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LOC728554 THO complex subunit 3 pseudogene [ Homo sapiens (human) ]

Gene ID: 728554, updated on 17-Sep-2024

Summary

Gene symbol
LOC728554
Gene description
THO complex subunit 3 pseudogene
See related
Ensembl:ENSG00000291113
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in esophagus (RPKM 28.0), testis (RPKM 21.1) and 24 other tissues See more
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Genomic context

See LOC728554 in Genome Data Viewer
Location:
5q35.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (177875261..177884268)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (178419649..178428672)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (177302262..177311269)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 1 subfamily X member 5 pseudogene Neighboring gene uncharacterized LOC105377753 Neighboring gene uncharacterized LOC124901146 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:177357323-177358130 Neighboring gene uncharacterized LOC100128340 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:177366549-177367149 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:177385067-177385586

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003615.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106795
    Related
    ENST00000506672.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    177875261..177884268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187546.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    9797..18804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187652.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    9797..18804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    178419649..178428672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)