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FRG1-DT FRG1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 728339, updated on 10-Oct-2023

Summary

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Official Symbol
FRG1-DTprovided by HGNC
Official Full Name
FRG1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:51590
See related
Ensembl:ENSG00000245685 AllianceGenome:HGNC:51590
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See FRG1-DT in Genome Data Viewer
Location:
4q35.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (189764391..189940733, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (193125370..193305718, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (190685545..190861888, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1262 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190606699-190607898 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190608412-190609611 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190615457-190616656 Neighboring gene uncharacterized LOC105377616 Neighboring gene RNA, U1 small nuclear 51, pseudogene Neighboring gene uncharacterized LOC124900882 Neighboring gene uncharacterized LOC105377619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:190749322-190749822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:190749823-190750323 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:190767193-190767906 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:190767907-190768620 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190802184-190803383 Neighboring gene long intergenic non-protein coding RNA 1596 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:190862333-190862832 Neighboring gene FSHD region gene 1 Neighboring gene MLLT10 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Markers

Clone Names

  • AF146191.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149038.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF146191, AF250324, BC087857

  2. NR_149039.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF146191, AF250324
    Related
    ENST00000660244.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    189764391..189940733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_015495300.1 Reference GRCh38.p14 PATCHES

    Range
    30127..33663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_015495301.1 Reference GRCh38.p14 PATCHES

    Range
    30127..33663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187543.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    97944..201813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187650.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    97944..278263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_187679.1 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    413120..513516 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    193125370..193305718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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