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PI4KAP1 phosphatidylinositol 4-kinase alpha pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 728233, updated on 28-Oct-2024

Summary

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Official Symbol
PI4KAP1provided by HGNC
Official Full Name
phosphatidylinositol 4-kinase alpha pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:33576
See related
Ensembl:ENSG00000290425 AllianceGenome:HGNC:33576
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in placenta (RPKM 21.8), brain (RPKM 17.9) and 25 other tissues See more
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Genomic context

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See PI4KAP1 in Genome Data Viewer
Location:
22q11.21
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (18533864..18548828, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (20383731..20398695, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene gamma-glutamyltransferase light chain family member 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:20377409-20377989 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13450 Neighboring gene transmembrane protein 191B Neighboring gene uncharacterized LOC124905077 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:20403447-20404004 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:20416022-20416587 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:20422795-20423596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:20424400-20425201 Neighboring gene uncharacterized LOC124905163

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article
  3. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • phosphatidylinositol 4-kinase, catalytic, alpha polypeptide pseudogene 1
  • phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1

Clone Names

  • FLJ39405

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003563.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    BC131538
    Related
    ENST00000618794.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    18533864..18548828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N8J0.1 GenPept UniProtKB/Swiss-Prot:Q8N8J0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials