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LINC02458 long intergenic non-protein coding RNA 2458 [ Homo sapiens (human) ]

Gene ID: 728084, updated on 10-Oct-2023

Summary

Official Symbol
LINC02458provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2458provided by HGNC
Primary source
HGNC:HGNC:53394
See related
Ensembl:ENSG00000246363 AllianceGenome:HGNC:53394
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02458 in Genome Data Viewer
Location:
12q21.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (89011126..89019692, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (88993079..89001645, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (89404903..89413469, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369887 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:89241015-89241614 Neighboring gene uncharacterized LOC124900331 Neighboring gene Sharpr-MPRA regulatory region 3904 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:89345592-89346528 Neighboring gene microtubule associated protein 1 light chain 3 beta pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6703 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6704 Neighboring gene uncharacterized LOC105378255

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038385.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK055062
    Related
    ENST00000500381.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    89011126..89019692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    88993079..89001645 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)