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CT47C1 cancer/testis antigen family 47 member C1 [ Homo sapiens (human) ]

Gene ID: 727838, updated on 28-Oct-2024

Summary

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Official Symbol
CT47C1provided by HGNC
Official Full Name
cancer/testis antigen family 47 member C1provided by HGNC
Primary source
HGNC:HGNC:53820
See related
Ensembl:ENSG00000277535 AllianceGenome:HGNC:53820
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
all
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Genomic context

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See CT47C1 in Genome Data Viewer
Location:
Xq24
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (119072993..119076768)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (117450728..117454503)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (118206956..118210728)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene COBL pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:118125886-118127085 Neighboring gene LON peptidase N-terminal domain and ring finger 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20952 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:118174593-118175792 Neighboring gene KIAA1210 Neighboring gene ARL5A pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Next Generation Proteomic Pipeline for Chromosome-Based Proteomic Research Using NeXtProt and GENCODE Databases. Hwang H, et al. J Proteome Res, 2017 Dec 1. PMID 28965411

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Homology

General protein information

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Preferred Names
cancer/testis antigen family 47 member C1
Names
cancer/testis antigen family 47 member A11 pseudogene
cancer/testis antigen family 47, member A pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396132.1 → NP_001383061.1  cancer/testis antigen family 47 member C1

    Status: VALIDATED

    Source sequence(s)
    AL772284
    Consensus CDS
    CCDS94658.1
    UniProtKB/Swiss-Prot
    A0A0U1RQG5
    Related
    ENSP00000488984.1, ENST00000620151.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    119072993..119076768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047442414.1 → XP_047298370.1  cancer/testis antigen family 47 member C1 isoform X1

    UniProtKB/Swiss-Prot
    A0A0U1RQG5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    117450728..117454503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054327675.1 → XP_054183650.1  cancer/testis antigen family 47 member C1 isoform X1

    UniProtKB/Swiss-Prot
    A0A0U1RQG5

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_027503.1: Suppressed sequence

    Description
    NG_027503.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0U1RQG5.1 GenPept UniProtKB/Swiss-Prot:A0A0U1RQG5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials