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bark protein bark beetle [ Apis mellifera (honey bee) ]

Gene ID: 725269, updated on 2-Oct-2024

Summary

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Gene symbol
bark
Gene description
protein bark beetle
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB49601
Orthologs
fruit fly all
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Genomic context

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See bark in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
26
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG4 NC_037641.1 (5436682..5450534)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG4 NC_007073.3 (3604630..3618835, complement)

Linkage Group LG4 - NC_037641.1Genomic Context describing neighboring genes Neighboring gene Repressor splicing factor 1 Neighboring gene centromere/kinetochore protein zw10 homolog Neighboring gene uncharacterized LOC113218744 Neighboring gene protein transport protein sec31 Neighboring gene uncharacterized LOC102655878

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
  2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein bark beetle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037641.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    5436682..5450534
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026440410.1 → XP_026296195.1  protein bark beetle

    UniProtKB/TrEMBL
    A0A7M7L8W3, A0A8B8GWU0
    Conserved Domains (5) summary
    smart00034
    Location:2494 → 2589
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00202
    Location:988 → 1094
    SR; Scavenger receptor Cys-rich
    cl00049
    Location:390 → 492
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam00530
    Location:1824 → 1922
    SRCR; Scavenger receptor cysteine-rich domain
    pfam13229
    Location:547 → 690
    Beta_helix; Right handed beta helix region
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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