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2610307P16Rik RIKEN cDNA 2610307P16 gene [ Mus musculus (house mouse) ]

Gene ID: 72518, updated on 22-Oct-2024

Summary

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Official Symbol
2610307P16Rikprovided by MGI
Official Full Name
RIKEN cDNA 2610307P16 geneprovided by MGI
Primary source
MGI:MGI:1919768
See related
Ensembl:ENSMUSG00000085936 AllianceGenome:MGI:1919768
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in thymus adult (RPKM 4.2), CNS E11.5 (RPKM 2.9) and 13 other tissues See more
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Genomic context

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See 2610307P16Rik in Genome Data Viewer
Location:
13 A3.1; 13 12.76 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (28644017..29069405, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (28460034..28885422, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3821 Neighboring gene STARR-seq mESC enhancer starr_34031 Neighboring gene predicted gene, 40841 Neighboring gene STARR-positive B cell enhancer ABC_E10786 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:28604501-28604741 Neighboring gene STARR-positive B cell enhancer ABC_E8520 Neighboring gene peptidylprolyl isomerase A pseudogene 13_297.1 Neighboring gene STARR-seq mESC enhancer starr_34032 Neighboring gene VISTA enhancer mm265 Neighboring gene STARR-seq mESC enhancer starr_34035 Neighboring gene microRNA 6368 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:28849781-28849890 Neighboring gene STARR-seq mESC enhancer starr_34037 Neighboring gene STARR-seq mESC enhancer starr_34040 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:28925292-28925505 Neighboring gene predicted gene, 53780 Neighboring gene predicted gene, 34639 Neighboring gene predicted gene, 34697

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045053.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AL590626, AL606488, AL606528
    Related
    ENSMUST00000134624.4

  2. NR_045054.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in a few of internal exons, and represents a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL590626, AL606488, AL606528
    Related
    ENSMUST00000243041.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    28644017..29069405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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