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LOC724105 cysteine rich transmembrane module containing 1 pseudogene [ Homo sapiens (human) ]

Gene ID: 724105, updated on 17-Sep-2024

Summary

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Gene symbol
LOC724105
Gene description
cysteine rich transmembrane module containing 1 pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC724105 in Genome Data Viewer
Location:
5q35.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (174479943..174480724)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (175020912..175021692)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (173906946..173907727)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724551 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173517875-173518376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173518377-173518876 Neighboring gene neuronal vesicle trafficking associated 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:173571770-173572270 Neighboring gene MPRA-validated peak5582 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173586113-173586614 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:173630390-173630890 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:173631827-173632589 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:173632590-173633351 Neighboring gene uncharacterized LOC124901139 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23674 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173734378-173734878 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16642 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23675 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173754289-173754790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173754791-173755290 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:173755250-173756449 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:173762765-173763964 Neighboring gene long intergenic non-protein coding RNA 1411 Neighboring gene uncharacterized LOC105377739 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:173958925-173960124 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • putative nuclear protein ORF1-FL49 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005611.6 

    Range
    101..882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    174479943..174480724
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    175020912..175021692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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