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Ptar1 protein prenyltransferase alpha subunit repeat containing 1 [ Mus musculus (house mouse) ]

Gene ID: 72351, updated on 2-Nov-2024

Summary

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Official Symbol
Ptar1provided by MGI
Official Full Name
protein prenyltransferase alpha subunit repeat containing 1provided by MGI
Primary source
MGI:MGI:1921875
See related
Ensembl:ENSMUSG00000074925 AllianceGenome:MGI:1921875
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700084D09Rik; 2010013L17Rik; 4930428J16Rik
Summary
Predicted to contribute to Rab geranylgeranyltransferase activity. Predicted to be active in cytoplasm. Orthologous to human PTAR1 (protein prenyltransferase alpha subunit repeat containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in cerebellum adult (RPKM 3.1), CNS E11.5 (RPKM 2.3) and 26 other tissues See more
Orthologs
human all
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Genomic context

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See Ptar1 in Genome Data Viewer
Location:
19 B; 19 18.45 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (23664728..23710249)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (23687361..23732885)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 95 Neighboring gene STARR-seq mESC enhancer starr_45778 Neighboring gene predicted gene, 22144 Neighboring gene SAP domain containing ribonucleoprotein pseudogene Neighboring gene amyloid beta precursor protein binding family A member 1 Neighboring gene predicted gene, 34076 Neighboring gene STARR-seq mESC enhancer starr_45783 Neighboring gene endosomal transmembrane epsin interactor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of Modifier Genes in a Mouse Model of Gaucher Disease. Klein AD, et al. Cell Rep, 2016 Sep 6. PMID 27568557
  2. Pancreatic Cell Fate Determination Relies on Notch Ligand Trafficking by NFIA. Scavuzzo MA, et al. Cell Rep, 2018 Dec 26. PMID 30590051
  3. Functional genomic landscape of cancer-intrinsic evasion of killing by T cells. Lawson KA, et al. Nature, 2020 Oct. PMID 32968282, Free PMC Article
  4. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
contributes_to Rab geranylgeranyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein prenyltransferase alpha subunit repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028208.1 → NP_082484.1  protein prenyltransferase alpha subunit repeat-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC132088, AC134830
    Consensus CDS
    CCDS50405.1
    UniProtKB/TrEMBL
    A0A494B9V8
    Related
    ENSMUSP00000157782.2, ENSMUST00000237333.2
    Conserved Domains (2) summary
    PLN02789
    Location:89 → 315
    PLN02789; farnesyltranstransferase
    pfam01239
    Location:180 → 207
    PPTA; Protein prenyltransferase alpha subunit repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    23664728..23710249
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527361.5 → XP_006527424.1  protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X1

    Conserved Domains (1) summary
    PLN02789
    Location:89 → 315
    PLN02789; farnesyltranstransferase
Nucleotide Protein Strain
Heading Accession and Version

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