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TRX-CAT1-2 tRNA-iMet (anticodon CAT) 1-2 [ Homo sapiens (human) ]

Gene ID: 7210, updated on 10-Oct-2023

Summary

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Official Symbol
TRX-CAT1-2provided by HGNC
Official Full Name
tRNA-iMet (anticodon CAT) 1-2provided by HGNC
Primary source
HGNC:HGNC:12318
See related
MIM:180621; AllianceGenome:HGNC:12318
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRM1; TRM2; TRMI2; RNTMI1; RNTMI2; RNTMT1; TRNAM1; TRNAMI2; TRX-CAT1-3
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Genomic context

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Location:
6p22.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (26286526..26286597)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (26154894..26154965)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (26286754..26286825)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24229 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24231 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24232 Neighboring gene H2B clustered histone 10 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:26285047-26286246 Neighboring gene uncharacterized LOC124901287 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17003 Neighboring gene H4 clustered histone 8 Neighboring gene Sharpr-MPRA regulatory region 6564 Neighboring gene CRISPRi-validated cis-regulatory element chr6.1130 Neighboring gene tRNA-Arg (anticodon TCG) 4-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24236 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17004 Neighboring gene tRNA-Ser (anticodon GCT) 6-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two nonallelic tRNAiMet genes are located in the p23 leads to q12 region of human chromosome 6. Naylor SL, et al. Proc Natl Acad Sci U S A, 1983 Aug. PMID 6308668, Free PMC Article
  2. Comparative analysis of human chromosomal segments bearing nonallelic dispersed tRNAimet genes. Santos T, et al. Cell, 1981 Mar. PMID 6261953
  3. A cluster of transfer RNA genes (TRM1, TRR3, and TRAN) on the short arm of human chromosome 6. Buckland RA, et al. Genomics, 1996 Jul 1. PMID 8661117
  4. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • tRNA methionine 1 (anticodon CAU)
  • tRNA methionine initiator 2
  • tRNA-iMet-CAT-1-2
  • tRNA-iMet-CAT-1-3
  • transfer RNA initiator methionine (CAT) 1-3
  • transfer RNA methionine 1 (anticodon CAU)
  • transfer RNA methionine initiator 2 (anticodon CAU)
  • transfer RNA-iMet (CAT) 1-2
  • transfer RNA-iMet (CAT) 1-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    26286526..26286597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    26154894..26154965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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