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Btbd17 BTB domain containing 17 [ Mus musculus (house mouse) ]

Gene ID: 72014, updated on 28-Oct-2024

Summary

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Official Symbol
Btbd17provided by MGI
Official Full Name
BTB domain containing 17provided by MGI
Primary source
MGI:MGI:1919264
See related
Ensembl:ENSMUSG00000000202 AllianceGenome:MGI:1919264
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tango10a; 1500005I02Rik
Summary
Predicted to be located in extracellular region. Is expressed in central nervous system; intestine; liver; olfactory epithelium; and retina. Orthologous to human BTBD17 (BTB domain containing 17). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in cerebellum adult (RPKM 8.0), CNS E11.5 (RPKM 7.0) and 8 other tissues See more
Orthologs
human all
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Genomic context

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See Btbd17 in Genome Data Viewer
Location:
11 E2; 11 80.54 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (114681495..114692738, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (114790669..114801916, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene tweety family member 2 Neighboring gene STARR-positive B cell enhancer mm9_chr11:114606533-114606834 Neighboring gene dynein axonemal intermediate chain 2 Neighboring gene kinesin family member 19A Neighboring gene G protein-coupled receptor 142 Neighboring gene G protein-coupled receptor, family C, group 5, member C Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:114734569-114734722 Neighboring gene STARR-seq mESC enhancer starr_31138 Neighboring gene CD300A molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Single-cell transcriptomic analysis of mouse neocortical development. Loo L, et al. Nat Commun, 2019 Jan 11. PMID 30635555, Free PMC Article
  2. ADAM10 hyperactivation acts on piccolo to deplete synaptic vesicle stores in Huntington's disease. Cozzolino F, et al. Hum Mol Genet, 2021 Jun 17. PMID 33601422
  3. Ex vivo Quantitative Proteomic Analysis of Serotonin Transporter Interactome: Network Impact of the SERT Ala56 Coding Variant. Quinlan MA, et al. Front Mol Neurosci, 2020. PMID 32581705, Free PMC Article
  4. Genomic analysis of mouse retinal development. Blackshaw S, et al. PLoS Biol, 2004 Sep. PMID 15226823, Free PMC Article
  5. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BTB/POZ domain-containing protein 17
Names
BTB (POZ) domain containing 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028055.4 → NP_082331.1  BTB/POZ domain-containing protein 17 precursor

    See identical proteins and their annotated locations for NP_082331.1

    Status: PROVISIONAL

    Source sequence(s)
    AL663079
    Consensus CDS
    CCDS25610.1
    UniProtKB/Swiss-Prot
    Q9DB72
    Related
    ENSMUSP00000000206.4, ENSMUST00000000206.4
    Conserved Domains (3) summary
    smart00225
    Location:64 → 162
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:169 → 267
    BACK; BTB And C-terminal Kelch
    pfam00651
    Location:63 → 158
    BTB; BTB/POZ domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    114681495..114692738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006534280.2 → XP_006534343.1  BTB/POZ domain-containing protein 17 isoform X4

    See identical proteins and their annotated locations for XP_006534343.1

    Conserved Domains (2) summary
    cd18493
    Location:119 → 191
    BACK_BTBD17; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 17 (BTBD17)
    cl38908
    Location:13 → 111
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  2. XM_017314777.1 → XP_017170266.1  BTB/POZ domain-containing protein 17 isoform X1

    Conserved Domains (2) summary
    cd18493
    Location:173 → 245
    BACK_BTBD17; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 17 (BTBD17)
    cl38908
    Location:67 → 165
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  3. XM_006534278.4 → XP_006534341.1  BTB/POZ domain-containing protein 17 isoform X2

    Conserved Domains (2) summary
    cd18292
    Location:46 → 156
    BTB_POZ_BTBD17; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 17 (BTBD17)
    cd18493
    Location:164 → 236
    BACK_BTBD17; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 17 (BTBD17)

  4. XM_017314778.3 → XP_017170267.1  BTB/POZ domain-containing protein 17 isoform X3

    Conserved Domains (2) summary
    cd18493
    Location:144 → 216
    BACK_BTBD17; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 17 (BTBD17)
    cl38908
    Location:38 → 136
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9DB72.1 GenPept UniProtKB/Swiss-Prot:Q9DB72

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