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VDE violaxanthin deepoxidase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7198121, updated on 21-Dec-2023

Summary

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Gene symbol
VDE
Gene description
violaxanthin deepoxidase
Locus tag
PHATRDRAFT_44635
Gene type
protein coding
RNA name
violaxanthin deepoxidase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See VDE in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_011672.1 (1116193..1117626, complement)

Chromosome 4 - NC_011672.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene zeaxanthin epoxidase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011672.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables violaxanthin de-epoxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xanthophyll cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
violaxanthin deepoxidase
XP_002178643.1
  • expressed gene with similarity to violaxanthin deepoxidase, involved in xanthophyll cycling; chloroplast precursor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011672.1 Reference assembly

    Range
    1116193..1117626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002178607.1 → XP_002178643.1  violaxanthin deepoxidase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002178643.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FUR6
    Conserved Domains (1) summary
    PLN02372
    Location:1 → 437
    PLN02372; violaxanthin de-epoxidase
Nucleotide Protein
Heading Accession and Version

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