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Zswim1 zinc finger SWIM-type containing 1 [ Mus musculus (house mouse) ]

Gene ID: 71971, updated on 28-Oct-2024

Summary

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Official Symbol
Zswim1provided by MGI
Official Full Name
zinc finger SWIM-type containing 1provided by MGI
Primary source
MGI:MGI:1919221
See related
Ensembl:ENSMUSG00000017764 AllianceGenome:MGI:1919221
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2410003H12Rik
Summary
Predicted to enable zinc ion binding activity. Located in nucleus. Orthologous to human ZSWIM1 (zinc finger SWIM-type containing 1). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Ubiquitous expression in testis adult (RPKM 13.0), adrenal adult (RPKM 9.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Zswim1 in Genome Data Viewer
Location:
2 H3; 2 85.27 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (164664933..164668791)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (164822686..164826867)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene sorting nexin family member 21 Neighboring gene acyl-CoA thioesterase 8 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:164630130-164630494 Neighboring gene zinc finger SWIM-type containing 3 Neighboring gene STARR-seq mESC enhancer starr_06336 Neighboring gene STARR-positive B cell enhancer ABC_E6018 Neighboring gene spermatogenesis associated 25 Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene cathepsin A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale identification of mammalian proteins localized to nuclear sub-compartments. Sutherland HG, et al. Hum Mol Genet, 2001 Sep 1. PMID 11555636
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
zinc finger SWIM domain-containing protein 1
Names
zinc finger, SWIM domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028028.3 → NP_082304.1  zinc finger SWIM domain-containing protein 1

    See identical proteins and their annotated locations for NP_082304.1

    Status: VALIDATED

    Source sequence(s)
    AL591495
    Consensus CDS
    CCDS17059.1
    UniProtKB/Swiss-Prot
    A2A5J3, Q8R163, Q9CWV7
    Related
    ENSMUSP00000017908.3, ENSMUST00000017908.3
    Conserved Domains (1) summary
    pfam04434
    Location:349 → 375
    SWIM; SWIM zinc finger

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    164664933..164668791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CWV7.1 GenPept UniProtKB/Swiss-Prot:Q9CWV7

Gene LinkOut

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