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COL6A6 collagen type VI alpha 6 chain [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 719319, updated on 17-Aug-2024

Summary

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Official Symbol
COL6A6provided by VGNC
Official Full Name
collagen type VI alpha 6 chainprovided by VGNC
Primary source
VGNC:VGNC:110374
See related
Ensembl:ENSMMUG00000040631
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See COL6A6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
40
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (32831529..32992982)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (171303908..171461924, complement)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial pseudogene Neighboring gene collagen type VI alpha 5 chain Neighboring gene phosphoinositide-3-kinase regulatory subunit 4 Neighboring gene glutathione S-transferase omega-1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent conferring tensile strength IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-6(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    32831529..32992982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028843688.1 → XP_028699521.1  collagen alpha-6(VI) chain isoform X4

    Conserved Domains (5) summary
    pfam01391
    Location:1459 → 1516
    Collagen; Collagen triple helix repeat (20 copies)
    smart00327
    Location:1188 → 1346
    VWA; von Willebrand factor (vWF) type A domain
    cd01472
    Location:622 → 785
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam00092
    Location:437 → 606
    VWA; von Willebrand factor type A domain
    cl00057
    Location:229 → 394
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_015132202.2 → XP_014987688.2  collagen alpha-6(VI) chain isoform X1

    UniProtKB/TrEMBL
    A0A1D5RDG7
    Conserved Domains (6) summary
    pfam01391
    Location:1459 → 1516
    Collagen; Collagen triple helix repeat (20 copies)
    smart00327
    Location:1188 → 1346
    VWA; von Willebrand factor (vWF) type A domain
    cd01450
    Location:1965 → 2143
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cd01472
    Location:622 → 785
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam00092
    Location:437 → 606
    VWA; von Willebrand factor type A domain
    cl00057
    Location:229 → 394
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_028843687.1 → XP_028699520.1  collagen alpha-6(VI) chain isoform X3

    UniProtKB/TrEMBL
    A0A1D5RDG7
    Conserved Domains (6) summary
    pfam01391
    Location:1637 → 1695
    Collagen; Collagen triple helix repeat (20 copies)
    smart00327
    Location:1188 → 1346
    VWA; von Willebrand factor (vWF) type A domain
    cd01450
    Location:1944 → 2122
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cd01472
    Location:622 → 785
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam00092
    Location:437 → 606
    VWA; von Willebrand factor type A domain
    cl00057
    Location:229 → 394
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  4. XM_028843686.1 → XP_028699519.1  collagen alpha-6(VI) chain isoform X2

    UniProtKB/TrEMBL
    A0A1D5RDG7
    Conserved Domains (6) summary
    pfam01391
    Location:1459 → 1516
    Collagen; Collagen triple helix repeat (20 copies)
    smart00327
    Location:1188 → 1346
    VWA; von Willebrand factor (vWF) type A domain
    cd01450
    Location:1965 → 2143
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cd01472
    Location:622 → 785
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam00092
    Location:437 → 606
    VWA; von Willebrand factor type A domain
    cl00057
    Location:229 → 394
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  5. XM_015132203.2 → XP_014987689.2  collagen alpha-6(VI) chain isoform X1

    UniProtKB/TrEMBL
    A0A1D5RDG7
    Conserved Domains (6) summary
    pfam01391
    Location:1459 → 1516
    Collagen; Collagen triple helix repeat (20 copies)
    smart00327
    Location:1188 → 1346
    VWA; von Willebrand factor (vWF) type A domain
    cd01450
    Location:1965 → 2143
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cd01472
    Location:622 → 785
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam00092
    Location:437 → 606
    VWA; von Willebrand factor type A domain
    cl00057
    Location:229 → 394
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  6. XM_015132205.2 → XP_014987691.2  collagen alpha-6(VI) chain isoform X1

    UniProtKB/TrEMBL
    A0A1D5RDG7
    Related
    ENSMMUP00000058360.2, ENSMMUT00000062136.2
    Conserved Domains (6) summary
    pfam01391
    Location:1459 → 1516
    Collagen; Collagen triple helix repeat (20 copies)
    smart00327
    Location:1188 → 1346
    VWA; von Willebrand factor (vWF) type A domain
    cd01450
    Location:1965 → 2143
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cd01472
    Location:622 → 785
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam00092
    Location:437 → 606
    VWA; von Willebrand factor type A domain
    cl00057
    Location:229 → 394
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
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