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STX5 syntaxin 5 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 718435, updated on 17-Aug-2024

Summary

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Official Symbol
STX5provided by VGNC
Official Full Name
syntaxin 5provided by VGNC
Primary source
VGNC:VGNC:78045
Locus tag
EGK_06092
See related
Ensembl:ENSMMUG00000005280
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
Syntaxin-5
Orthologs
human mouse all
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Genomic context

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See STX5 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (11361385..11387231)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (11467218..11497481)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene WD repeat domain 74 Neighboring gene 60S ribosomal protein L9 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene nuclear RNA export factor 1 Neighboring gene transmembrane protein 223 Neighboring gene transmembrane protein 179B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261004.2 → NP_001247933.1  syntaxin-5

    See identical proteins and their annotated locations for NP_001247933.1

    Status: PROVISIONAL

    Source sequence(s)
    JV045547
    UniProtKB/TrEMBL
    A0A5F8AI92, A0A8J8Y346, G7NCS0, H9Z1T6
    Related
    ENSMMUP00000080979.1, ENSMMUT00000081702.1
    Conserved Domains (3) summary
    COG5325
    Location:182 → 324
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:266 → 338
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:53 → 74
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    11361385..11387231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015113754.2 → XP_014969240.1  syntaxin-5 isoform X2

    UniProtKB/TrEMBL
    A0A5F8ARS9
    Conserved Domains (2) summary
    cd15844
    Location:170 → 242
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    cl26014
    Location:86 → 228
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...

  2. XM_028832854.1 → XP_028688687.1  syntaxin-5 isoform X1

    UniProtKB/TrEMBL
    A0A5F8AI92
    Related
    ENSMMUP00000080103.1, ENSMMUT00000105681.1
    Conserved Domains (3) summary
    COG5325
    Location:128 → 270
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:212 → 284
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:1 → 18
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
Nucleotide Protein
Heading Accession and Version

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