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Pnma8a PNMA family member 8A [ Mus musculus (house mouse) ]

Gene ID: 71691, updated on 28-Oct-2024

Summary

Official Symbol
Pnma8aprovided by MGI
Official Full Name
PNMA family member 8Aprovided by MGI
Primary source
MGI:MGI:1918941
See related
Ensembl:ENSMUSG00000041141 AllianceGenome:MGI:1918941
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pnmal1; 0710005I19Rik; 4930488B01Rik
Summary
Is expressed in cortical plate and genitourinary system. Orthologous to human PNMA8A (PNMA family member 8A). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in frontal lobe adult (RPKM 15.2), cortex adult (RPKM 13.2) and 6 other tissues See more
Orthologs
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Genomic context

See Pnma8a in Genome Data Viewer
Location:
7 A2; 7 9.15 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (16683325..16698532)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (16949950..16964607)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32630 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:17529805-17530006 Neighboring gene PNMA family member 8B Neighboring gene predicted gene, 25815 Neighboring gene PNMA family member 8C Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:17575492-17575675 Neighboring gene coiled-coil domain containing 8

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Clone Names

  • MGC54820

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
paraneoplastic antigen-like protein 8A
Names
PNMA-like 1
PNMA-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007569.2NP_001007570.1  paraneoplastic antigen-like protein 8A

    See identical proteins and their annotated locations for NP_001007570.1

    Status: VALIDATED

    Source sequence(s)
    AC148976, AK079661, BC048228, BQ175886
    Consensus CDS
    CCDS20858.1
    UniProtKB/Swiss-Prot
    Q80VM8, Q8C533
    Related
    ENSMUSP00000040929.7, ENSMUST00000038163.8
    Conserved Domains (1) summary
    pfam14893
    Location:6360
    PNMA

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    16683325..16698532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006540361.5XP_006540424.1  paraneoplastic antigen-like protein 8A isoform X1

    See identical proteins and their annotated locations for XP_006540424.1

    UniProtKB/Swiss-Prot
    Q80VM8, Q8C533
    Conserved Domains (1) summary
    pfam14893
    Location:6360
    PNMA