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CELF3 CUGBP Elav-like family member 3 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 716884, updated on 17-Aug-2024

Summary

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Official Symbol
CELF3provided by VGNC
Official Full Name
CUGBP Elav-like family member 3provided by VGNC
Primary source
VGNC:VGNC:70936
See related
Ensembl:ENSMMUG00000016952
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CELF3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (99377256..99392196)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (126220670..126235469, complement)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670749 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC107000927 Neighboring gene regulatory subunit of type II PKA R-subunit domain containing 1 Neighboring gene sorting nexin 27 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114670750

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CUGBP Elav-like family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    99377256..99392196
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015152200.2 → XP_015007686.2  CUGBP Elav-like family member 3 isoform X1

    UniProtKB/TrEMBL
    G7MDL1
    Conserved Domains (4) summary
    PRK12323
    Location:265 → 402
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional
    cd12632
    Location:64 → 139
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:145 → 225
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:432 → 510
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  2. XM_028828926.1 → XP_028684759.1  CUGBP Elav-like family member 3 isoform X2

    UniProtKB/TrEMBL
    G7MDL1
    Conserved Domains (4) summary
    PRK12323
    Location:264 → 401
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional
    cd12632
    Location:64 → 139
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:144 → 224
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:431 → 509
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  3. XM_015152205.2 → XP_015007691.1  CUGBP Elav-like family member 3 isoform X6

    UniProtKB/TrEMBL
    G7MDL1
    Conserved Domains (4) summary
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:305 → 383
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 390
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:1 → 12
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_002801801.3 → XP_002801847.2  CUGBP Elav-like family member 3 isoform X3

    UniProtKB/TrEMBL
    F7CBU0, G7MDL1
    Related
    ENSMMUP00000022293.4, ENSMMUT00000023818.4
    Conserved Domains (4) summary
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:381 → 459
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:9 → 466
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  5. XM_015152219.2 → XP_015007705.1  CUGBP Elav-like family member 3 isoform X7

    UniProtKB/TrEMBL
    G7MDL1
    Conserved Domains (3) summary
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:304 → 382
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl17169
    Location:1 → 12
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_015152199.2 → XP_015007685.1  CUGBP Elav-like family member 3 isoform X4

    UniProtKB/TrEMBL
    G7MDL1
    Conserved Domains (4) summary
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:380 → 458
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:9 → 465
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  7. XM_015152190.2 → XP_015007676.1  CUGBP Elav-like family member 3 isoform X5

    UniProtKB/TrEMBL
    G7MDL1
    Conserved Domains (4) summary
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:93 → 173
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:380 → 458
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:9 → 465
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  8. XM_015152209.2 → XP_015007695.1  CUGBP Elav-like family member 3 isoform X6

    UniProtKB/TrEMBL
    G7MDL1
    Conserved Domains (4) summary
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:305 → 383
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 390
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:1 → 12
    RRM_SF; RNA recognition motif (RRM) superfamily

  9. XM_015152231.2 → XP_015007717.1  CUGBP Elav-like family member 3 isoform X7

    UniProtKB/TrEMBL
    G7MDL1
    Conserved Domains (3) summary
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:304 → 382
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl17169
    Location:1 → 12
    RRM_SF; RNA recognition motif (RRM) superfamily

  10. XM_015152226.2 → XP_015007712.1  CUGBP Elav-like family member 3 isoform X7

    UniProtKB/TrEMBL
    G7MDL1
    Conserved Domains (3) summary
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:304 → 382
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl17169
    Location:1 → 12
    RRM_SF; RNA recognition motif (RRM) superfamily

  11. XM_015152212.2 → XP_015007698.1  CUGBP Elav-like family member 3 isoform X6

    UniProtKB/TrEMBL
    G7MDL1
    Conserved Domains (4) summary
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:305 → 383
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 390
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:1 → 12
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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