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SDCBP2 syndecan binding protein 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 715602, updated on 17-Aug-2024

Summary

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Official Symbol
SDCBP2provided by VGNC
Official Full Name
syndecan binding protein 2provided by VGNC
Primary source
VGNC:VGNC:77017
Locus tag
EGK_02575
See related
Ensembl:ENSMMUG00000018165
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SDCBP2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (65236278..65255115)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (34080382..34099762, complement)

Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670456 Neighboring gene uncharacterized LOC107000446 Neighboring gene FKBP prolyl isomerase 1A Neighboring gene syntaphilin Neighboring gene RAD21 cohesin complex component like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntenin-2
Names
Syndecan-binding protein 2
syndecan binding protein (syntenin) 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041763.1 Reference Mmul_10 Primary Assembly

    Range
    65236278..65255115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001112943.4 → XP_001112943.1  syntenin-2 isoform X2

    See identical proteins and their annotated locations for XP_001112943.1

    UniProtKB/TrEMBL
    A0A8J8YF06, F7CR07, F7F252, G7N2Q9
    Related
    ENSMMUP00000023889.4, ENSMMUT00000025532.4
    Conserved Domains (1) summary
    cd00992
    Location:106 → 185
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_015149325.2 → XP_015004811.1  syntenin-2 isoform X1

    UniProtKB/TrEMBL
    F7F252
    Conserved Domains (1) summary
    cd00992
    Location:142 → 221
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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