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PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714283, updated on 17-Aug-2024

Summary

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Official Symbol
PLOD3provided by VGNC
Official Full Name
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3provided by VGNC
Primary source
VGNC:VGNC:76177
See related
Ensembl:ENSMMUG00000006949
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PLOD3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
19
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (43338654..43350765, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (126617757..126629997, complement)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene putative diacylglycerol O-acyltransferase 2-like protein DGAT2L7P Neighboring gene 40S ribosomal protein SA-like Neighboring gene zinc finger HIT-type containing 1 Neighboring gene claudin 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    43338654..43350765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015134529.2 → XP_014990015.2  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

    UniProtKB/TrEMBL
    F7E119, I0FW63
    Related
    ENSMMUP00000009121.4, ENSMMUT00000009711.4
    Conserved Domains (1) summary
    smart00702
    Location:572 → 735
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials