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HMCN1 hemicentin 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714026, updated on 17-Aug-2024

Summary

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Official Symbol
HMCN1provided by VGNC
Official Full Name
hemicentin 1provided by VGNC
Primary source
VGNC:VGNC:73423
See related
Ensembl:ENSMMUG00000010474
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See HMCN1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
107
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (42966286..43420231)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (181042973..181495543, complement)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106994502 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC114679540 Neighboring gene U6 spliceosomal RNA Neighboring gene proteoglycan 4 Neighboring gene translocated promoter region, nuclear basket protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hemicentin-1
Names
hemicentin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    42966286..43420231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015121897.2 → XP_014977383.2  hemicentin-1 isoform X4

    UniProtKB/TrEMBL
    F7BH35, G7MF24
    Related
    ENSMMUP00000013731.4, ENSMMUT00000014658.4
    Conserved Domains (12) summary
    smart00408
    Location:3543 → 3606
    IGc2; Immunoglobulin C-2 Type
    smart00179
    Location:5432 → 5471
    EGF_CA; Calcium-binding EGF-like domain
    smart00209
    Location:4589 → 4641
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:1086 → 1167
    IG_like; Immunoglobulin like
    smart00682
    Location:4868 → 5092
    G2F; G2 nidogen domain and fibulin
    cd00054
    Location:5230 → 5263
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00198
    Location:42 → 198
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam07645
    Location:5272 → 5313
    EGF_CA; Calcium-binding EGF domain
    cd00096
    Location:3169 → 3235
    Ig; Immunoglobulin domain
    pfam07679
    Location:1171 → 1258
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:3987 → 4062
    Ig_3; Immunoglobulin domain
    cl11960
    Location:792 → 884
    Ig; Immunoglobulin domain

  2. XM_015121910.2 → XP_014977396.2  hemicentin-1 isoform X1

    UniProtKB/TrEMBL
    G7MF24
    Conserved Domains (11) summary
    smart00408
    Location:2900 → 2963
    IGc2; Immunoglobulin C-2 Type
    smart00179
    Location:4789 → 4828
    EGF_CA; Calcium-binding EGF-like domain
    smart00209
    Location:3946 → 3998
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:441 → 522
    IG_like; Immunoglobulin like
    smart00682
    Location:4225 → 4449
    G2F; G2 nidogen domain and fibulin
    cd00054
    Location:4587 → 4620
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:4629 → 4670
    EGF_CA; Calcium-binding EGF domain
    cd00096
    Location:2526 → 2592
    Ig; Immunoglobulin domain
    pfam07679
    Location:526 → 613
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:3344 → 3419
    Ig_3; Immunoglobulin domain
    cl11960
    Location:147 → 239
    Ig; Immunoglobulin domain

  3. XM_028851450.1 → XP_028707283.1  hemicentin-1 isoform X3

    UniProtKB/TrEMBL
    G7MF24
    Conserved Domains (11) summary
    smart00408
    Location:2900 → 2963
    IGc2; Immunoglobulin C-2 Type
    smart00179
    Location:4672 → 4711
    EGF_CA; Calcium-binding EGF-like domain
    smart00209
    Location:3946 → 3998
    TSP1; Thrombospondin type 1 repeats
    smart00409
    Location:441 → 522
    IG; Immunoglobulin
    smart00682
    Location:4225 → 4449
    G2F; G2 nidogen domain and fibulin
    cd00054
    Location:4587 → 4620
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:4629 → 4670
    EGF_CA; Calcium-binding EGF domain
    cd00096
    Location:2526 → 2592
    Ig; Immunoglobulin domain
    pfam07679
    Location:526 → 613
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:3344 → 3419
    Ig_3; Immunoglobulin domain
    cl11960
    Location:147 → 239
    Ig; Immunoglobulin domain

  4. XM_028851446.1 → XP_028707279.1  hemicentin-1 isoform X2

    UniProtKB/TrEMBL
    G7MF24
    Conserved Domains (11) summary
    smart00408
    Location:2898 → 2961
    IGc2; Immunoglobulin C-2 Type
    smart00179
    Location:4787 → 4826
    EGF_CA; Calcium-binding EGF-like domain
    smart00209
    Location:3944 → 3996
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:441 → 522
    IG_like; Immunoglobulin like
    smart00682
    Location:4223 → 4447
    G2F; G2 nidogen domain and fibulin
    cd00054
    Location:4585 → 4618
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:4627 → 4668
    EGF_CA; Calcium-binding EGF domain
    cd00096
    Location:2524 → 2590
    Ig; Immunoglobulin domain
    pfam07679
    Location:526 → 613
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:3342 → 3417
    Ig_3; Immunoglobulin domain
    cl11960
    Location:147 → 239
    Ig; Immunoglobulin domain
Nucleotide Protein
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