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Cdcp3 CUB domain containing protein 3 [ Mus musculus (house mouse) ]

Gene ID: 71395, updated on 17-Aug-2024

Summary

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Official Symbol
Cdcp3provided by MGI
Official Full Name
CUB domain containing protein 3provided by MGI
Primary source
MGI:MGI:1918645
See related
Ensembl:ENSMUSG00000006204 AllianceGenome:MGI:1918645
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5430419D17Rik
Summary
Predicted to enable scavenger receptor activity. Predicted to be located in extracellular region and membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Cdcp3 in Genome Data Viewer
Location:
7; 7 F3
Exon count:
69
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (130776131..130908181)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (131174402..131306452)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4933402N03 gene Neighboring gene RIKEN cDNA 1700029B22 gene Neighboring gene deleted in malignant brain tumors 1 pseudogene Neighboring gene CUB and zona pellucida-like domains 1 Neighboring gene family with sequence similarity 24 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Deleted in malignant brain tumors-1 protein (DMBT1): a pattern recognition receptor with multiple binding sites. Ligtenberg AJ, et al. Int J Mol Sci, 2010. PMID 21614203, Free PMC Article
  2. The human (PEDB) and mouse (mPEDB) Prostate Expression Databases. Nelson PS, et al. Nucleic Acids Res, 2002 Jan 1. PMID 11752298, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative DMBT1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370825.1 → NP_001357754.1  putative DMBT1-like protein isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC110885
    UniProtKB/TrEMBL
    A0A1L1SUH6
    Related
    ENSMUSP00000150784.3, ENSMUST00000208921.4
    Conserved Domains (4) summary
    smart00202
    Location:1272 → 1372
    SR; Scavenger receptor Cys-rich
    cd00041
    Location:1150 → 1260
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam00100
    Location:2212 → 2450
    Zona_pellucida; Zona pellucida-like domain
    cl00049
    Location:272 → 375
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

  2. NM_175166.3 → NP_780375.2  putative DMBT1-like protein isoform 1 precursor

    See identical proteins and their annotated locations for NP_780375.2

    Status: VALIDATED

    Source sequence(s)
    AC110885, AK035662
    Consensus CDS
    CCDS21911.1
    UniProtKB/Swiss-Prot
    E9QN00, Q8BZE1
    Related
    ENSMUSP00000061529.6, ENSMUST00000050586.6
    Conserved Domains (3) summary
    smart00202
    Location:144 → 244
    SR; Scavenger receptor Cys-rich
    cd00041
    Location:556 → 666
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl00049
    Location:272 → 375
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    130776131..130908181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BZE1.2 GenPept UniProtKB/Swiss-Prot:Q8BZE1

Gene LinkOut

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