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LTBR lymphotoxin beta receptor [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 712550, updated on 17-Aug-2024

Summary

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Official Symbol
LTBRprovided by VGNC
Official Full Name
lymphotoxin beta receptorprovided by VGNC
Primary source
VGNC:VGNC:100075
See related
Ensembl:ENSMMUG00000020213
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
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Genomic context

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See LTBR in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (6528788..6536607)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (6612958..6620530)

Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 1A Neighboring gene sodium channel epithelial 1 subunit alpha Neighboring gene TAP binding protein like Neighboring gene vesicle associated membrane protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hematopoietic or lymphoid organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 3
Names
lymphotoxin beta receptor (TNFR superfamily, member 3)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001265736.1 → NP_001252665.1  tumor necrosis factor receptor superfamily member 3 precursor

    See identical proteins and their annotated locations for NP_001252665.1

    Status: PROVISIONAL

    Source sequence(s)
    JV565119
    UniProtKB/TrEMBL
    A0A1D5R751, A0A1D5REE1, F6V995
    Related
    ENSMMUP00000026611.4, ENSMMUT00000028437.4
    Conserved Domains (3) summary
    cd00185
    Location:170 → 210
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 168
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:148 → 210
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041764.1 Reference Mmul_10 Primary Assembly

    Range
    6528788..6536607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015150804.2 → XP_015006290.1  tumor necrosis factor receptor superfamily member 3 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QP89, A0A1D5REE1
    Related
    ENSMMUP00000049866.2, ENSMMUT00000059337.2
    Conserved Domains (3) summary
    cd00185
    Location:196 → 236
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 194
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:174 → 236
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  2. XM_015150805.2 → XP_015006291.1  tumor necrosis factor receptor superfamily member 3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5REE1
    Conserved Domains (3) summary
    cd00185
    Location:169 → 209
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 167
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:147 → 209
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein
Heading Accession and Version

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