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Lrrc72 leucine rich repeat containing 72 [ Mus musculus (house mouse) ]

Gene ID: 71156, updated on 28-Oct-2024

Summary

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Official Symbol
Lrrc72provided by MGI
Official Full Name
leucine rich repeat containing 72provided by MGI
Primary source
MGI:MGI:1920830
See related
Ensembl:ENSMUSG00000020545 AllianceGenome:MGI:1920830
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700108M19Rik; 4933421E18Rik
Summary
Orthologous to human LRRC72 (leucine rich repeat containing 72). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Restricted expression toward testis adult (RPKM 4.3) See more
Orthologs
human all
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Genomic context

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See Lrrc72 in Genome Data Viewer
Location:
12 A3; 12 16.63 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (36258328..36306395, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (36208329..36256396, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene basic leucine zipper and W2 domains 2 Neighboring gene ribosomal protein S3A pseudogene Neighboring gene STARR-seq mESC enhancer starr_31915 Neighboring gene STARR-positive B cell enhancer ABC_E1153 Neighboring gene ankyrin repeat and MYND domain containing 2 Neighboring gene non-POU-domain-containing, octamer binding protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_31916 Neighboring gene predicted gene, 40390 Neighboring gene STARR-seq mESC enhancer starr_31918 Neighboring gene predicted gene, 40392 Neighboring gene STARR-seq mESC enhancer starr_31919 Neighboring gene sclerostin domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Transcriptome Analysis of Targeted Mouse Mutations Reveals the Topography of Local Changes in Gene Expression. West DB, et al. PLoS Genet, 2016 Feb. PMID 26839965, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC130241, MGC130242

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
leucine-rich repeat-containing protein 72

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001361098.1 → NP_001348027.1  leucine-rich repeat-containing protein 72 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC124776
    Consensus CDS
    CCDS88328.1
    UniProtKB/TrEMBL
    A0A1Y7VMI0
    Related
    ENSMUSP00000152732.2, ENSMUST00000221155.2
    Conserved Domains (3) summary
    COG4886
    Location:16 → 128
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:50 → 69
    LRR_1; leucine-rich repeat [structural motif]
    pfam14580
    Location:79 → 191
    LRR_9; Leucine-rich repeat

  2. NM_027699.3 → NP_081975.1  leucine-rich repeat-containing protein 72 isoform 1

    See identical proteins and their annotated locations for NP_081975.1

    Status: VALIDATED

    Source sequence(s)
    AC124776, AK007140, AK077182
    Consensus CDS
    CCDS25886.1
    UniProtKB/TrEMBL
    Q9D9C3
    Related
    ENSMUSP00000020853.2, ENSMUST00000020853.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    36258328..36306395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006515213.2 → XP_006515276.1  leucine-rich repeat-containing protein 72 isoform X1

    UniProtKB/TrEMBL
    A0A1Y7VMI0
    Conserved Domains (3) summary
    COG4886
    Location:16 → 128
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:50 → 69
    LRR_1; leucine-rich repeat [structural motif]
    pfam14580
    Location:79 → 191
    LRR_9; Leucine-rich repeat

  2. XM_030246923.1 → XP_030102783.1  leucine-rich repeat-containing protein 72 isoform X3

    UniProtKB/TrEMBL
    Q9D9C3

  3. XM_030246922.1 → XP_030102782.1  leucine-rich repeat-containing protein 72 isoform X3

    UniProtKB/TrEMBL
    Q9D9C3

  4. XM_030246921.1 → XP_030102781.1  leucine-rich repeat-containing protein 72 isoform X3

    UniProtKB/TrEMBL
    Q9D9C3

  5. XM_017315204.2 → XP_017170693.1  leucine-rich repeat-containing protein 72 isoform X2

    Conserved Domains (2) summary
    sd00031
    Location:50 → 69
    LRR_1; leucine-rich repeat [structural motif]
    pfam14580
    Location:79 → 171
    LRR_9; Leucine-rich repeat

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001177877.1: Suppressed sequence

    Description
    NM_001177877.1: This RefSeq was removed because currently there is insufficient support for the transcript and protein.
Nucleotide Protein Strain
Heading Accession and Version

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