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SMPD1 sphingomyelin phosphodiesterase 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 711248, updated on 17-Aug-2024

Summary

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Official Symbol
SMPD1provided by VGNC
Official Full Name
sphingomyelin phosphodiesterase 1provided by VGNC
Primary source
VGNC:VGNC:77659
See related
Ensembl:ENSMMUG00000007717
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SMPD1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (59545857..59550541, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (60386137..60390821, complement)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene hemopexin Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene uncharacterized LOC106993345 Neighboring gene uncharacterized LOC106993347 Neighboring gene V-type proton ATPase subunit E 1 pseudogene Neighboring gene caveolae associated protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase
Names
sphingomyelin phosphodiesterase 1, acid lysosomal
XP_001110212.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    59545857..59550541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001110212.4 → XP_001110212.1  sphingomyelin phosphodiesterase

    See identical proteins and their annotated locations for XP_001110212.1

    UniProtKB/TrEMBL
    F7C9N4, H9ZCN4
    Related
    ENSMMUP00000010133.2, ENSMMUT00000010803.4
    Conserved Domains (3) summary
    smart00741
    Location:87 → 160
    SapB; Saposin (B) Domains
    cd00842
    Location:201 → 496
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
    pfam00149
    Location:254 → 461
    Metallophos; Calcineurin-like phosphoesterase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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